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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015916140.1_cds_XP_016465826.1_58743
CDS Infomation

[gene=LOC107788649] [db_xref=GeneID:107788649] [protein=probable RNA polymerase II transcription factor B subunit 1-1] [protein_id=XP_016465826.1] [location=complement(join(6109..6195,6542..6610,7431..7478,8571..8648,8771..8884,8973..9164,9253..9380,9465..9521,9873..9996,10386..10451,10618..10773,11189..11245,13284..13328,13715..13807,13965..14040,14265..14388,15295..15358,15537..15598,16608..16686,18018..18098))] [gbkey=CDS]
Sequence

ATGGCCGATGGGAAGGTCGTTAAGCGTGCCAAGTACAAATCTTCAGTCAAGGACCCTGGC
GTTCCTGGCGTTTTGAAATTGACCAAGGAACGGTTTTTCTTCATGCCGAATGACCCAACA
TCCACGACAAAGCTTAATGTGGAGTTCAAGTTGATTAAAGGCCACAGGTCTTCTAAAGAG
GGTTCAAGTAAGCAGGCTCTTCTTAATCTCATGCACGATCAGGGCAGGAGTTATATTTTT
GAGTTTGATAGCTTCCCGGACCGCGACAAGTGTCGAGAATTCGTTGCCTCTGCAATTGCG
GCTTGTGGAGAAGTTGTGAAAGCTGCTTCTGAAAAACCTGCTGTTCCACATGATGAACAA
CTCAGTGCAGCAGAAATGGGACGTCGGATTAAGTTACTGCAGGATAATAGTGAATTGCAG
AAACTCCACAGGCAATTGGTCATTGGAGGTATTCTATCAGAGGCTGAATTTTGGGCCGCT
AGGAAGAAGCTACTGGAACAGGGCGATATCAAGAAGCCAAAACAACGGGTGGCTTTAAAA
AATGACATGTGGAGTGTTAAACCTTTATCTGATGGTCAGACGAACAGAGTTACATTTAAC
TTGACACCGGAGGTTATTCATCAGATTTTTGCTGAGAAACCAGCTGTCCGCCAAGCATAT
TTGAAATTTGTTCCGGGCAAGATGTCAGAAAAAGAATTCTGGACTAAATATTCAAGAGCT
GAATACCTCCACAGCACAAAAAATATTGTTGCAGCAGCTGCTGAGGCTGCTGAAGATGAG
GAGCTTGCGGTTTTCTTGAAGCAAGATGACATGTTAGCATTTGAAGCTCGTAAGAAGATC
AGAAGGGTGGATCCAACTCTGGACATGGAAGCAGATGAAGGTGACGATTACATGCATCTC
CCGGATCATGGGCTACCTCTGGATGAAACTAAAGAGATTCTGGAACCACAGTATGAACCA
TTCAAGAGGTCGTTCTCGCAGTACCTCAACCAGCATGCAGCAGTAGTTCTTCGAGGAAGA
GTTATAGATGTTGAGCTGGGTGACACAAGATCTGTTGCTGAAGCATTCACCAGGACAAAT
CAGGCTGAACTAGCTGCCGAAGTGTCTGATGAGAGTGCATATAGAGAACGGATAGCTAAA
GTTTCTCGAGTTGCTGAAATTGAGGATCTTCAGGGACCTCATGAGCCACCAGTTGCATTG
CTAAGTATCAAGGATCCTCGGGATTACTTTGATTCTCAGCAAGCAAATGCAATAAAGGCT
TTGGGGGATGGTGGTACAGGGACAAGACAGCTGAAATTTAATGTGAGCAAAGAAGATGCC
TTTTGCTCCCTGAAGAACTCCATCTCCGAGATAAATTCACAAGGATTGACCGAACCAATA
ATTAGTCCAGAAGTAGCTCTCAAGGTTCTCAACGGGCTTAGTCAGAATATCTCGAGTACA
AAGTATCATCTGGGAAAGAACCCCCATGAGAGTGTTTTAGATCGGCTGCCTAGTGCAACG
AAAGATGAACTATTACTCCATTGGACATCAATTCAGGAATTATTGAAGCACTTCTGGTCA
TCTTATCCAATAACCGCAAAATATTTCTACACCAAGGTGACTAGATTAAAGGATGCAATG
TCTCAGATATACCCCAAGTTGCAGGAGATCAAGGAATCTGTGCAATCGGATTTCAGGCAT
CAAGTTTCCCTTCTTGTACAGCCAATGCTTCAGGCTTTAGATGCTGCCTTTGCCCATTAT
GATGCAGATATACAGAAGAGATCTGCCAAAAGTGGGGAGAGACCAAATGGATTTGCTTAG

Peptide Sequence

PEP ID

XP_016465826.1
PEP Infomation

PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 [Nicotiana tabacum]
Sequence

MADGKVVKRAKYKSSVKDPGVPGVLKLTKERFFFMPNDPTSTTKLNVEFKLIKGHRSSKE
GSSKQALLNLMHDQGRSYIFEFDSFPDRDKCREFVASAIAACGEVVKAASEKPAVPHDEQ
LSAAEMGRRIKLLQDNSELQKLHRQLVIGGILSEAEFWAARKKLLEQGDIKKPKQRVALK
NDMWSVKPLSDGQTNRVTFNLTPEVIHQIFAEKPAVRQAYLKFVPGKMSEKEFWTKYSRA
EYLHSTKNIVAAAAEAAEDEELAVFLKQDDMLAFEARKKIRRVDPTLDMEADEGDDYMHL
PDHGLPLDETKEILEPQYEPFKRSFSQYLNQHAAVVLRGRVIDVELGDTRSVAEAFTRTN
QAELAAEVSDESAYRERIAKVSRVAEIEDLQGPHEPPVALLSIKDPRDYFDSQQANAIKA
LGDGGTGTRQLKFNVSKEDAFCSLKNSISEINSQGLTEPIISPEVALKVLNGLSQNISST
KYHLGKNPHESVLDRLPSATKDELLLHWTSIQELLKHFWSSYPITAKYFYTKVTRLKDAM
SQIYPKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADIQKRSAKSGERPNGFA

Transcript Sequence

Gene sequence data has not been registered.